Exp-Plant Catalog

Exp-Plant Catalog

RIKEN BRC EPD

Data for individual clone

Category DNA>cDNA>rafl_clone
BRC No {{serverconnect1.data.query1[0].brcno}}  moveToRecord
Clone ID {{serverconnect1.data.query1[0].rafl_name}}
AGI No from full DNA Sequence ({{serverconnect1.data.query1[0].sequence_primer_full}})
Chr{{chromosome_full}}:{{direction_full}}({{up_full}}-{{down_full}})--> GenomeBrowser
{{agi9_blastn_full}} from Blastn search--> Blastn Result

AGI No from DNA Sequence (Paired;
5' -->3')

 

{{agi9_mapping_four}} from Mapping-->GenomeBrowser

{{agi9_blastn_five}} from Blastn search using 5' Partial DNA Sequence-->Blastn Result
{{agi9_blastn_three}} from Blastn search using 3' Partial DNA Sequence-->Blastn Result

 

AGI No from 5' partial DNA Sequence ({{serverconnect1.data.query1[0].sequence_primer_five}})

 
Chr{{chromosome_five}}:{{direction_five}}({{up_five}}-{{down_five}})-->GenomeBrowser
{{agi9_blastn_five}}from Blastn search-->Blastn Result

AGI No from 3' partial DNA Sequence ({{serverconnect1.data.query1[0].sequence_primer_three}})
Chr{{chromosome_three}}:{{direction_three}}({{up_three}}-{{down_three}})-->GenomeBrowser
{{agi9_blastn_three}}from Blastn search-->Blastn Result
AGI No from Developer {{serverconnect2.data.query[0].agicode_oldc}}

Full Seq Name =
{{serverconnect1.data.query1[0].sequence_name_full}}

➠show in Fasta

➠show with related sequences in Fasta

 

Acc No=
{{serverconnect1.data.query1[0].accession_number_full}}

 

 {{serverconnect1.data.query1[0].sequence_full}}

5 Prime Seq Name =
{{serverconnect1.data.query1[0].sequence_name_five}}

➠show in Fasta

➠show with related sequences in Fasta

 

Acc No=
{{serverconnect1.data.query1[0].accession_number_five}}

 

 {{serverconnect1.data.query1[0].sequence_five}}

3 Prime Seq Name =
{{serverconnect1.data.query1[0].sequence_name_three}}

➠show in Fasta

➠show with related sequences in Fasta

 

Acc No=
{{serverconnect1.data.query1[0].accession_number_three}}

 

 {{serverconnect1.data.query1[0].sequence_three}}